samtools-1.15.1-3.fc39 RPM for x86_64

From Fedora 39 for x86_64 / s

SAM (Sequence Alignment/Map) is a flexible generic format for storing
nucleotide sequence alignment.
SAM Tools provide various utilities for manipulating alignments in the
SAM format, including sorting, merging, indexing and generating
alignments in a per-position format.

Provides

• samtools
• samtools(x86-64)

Requires

• /usr/bin/perl
• libc.so.6()(64bit)
• libc.so.6(GLIBC_2.14)(64bit)
• libc.so.6(GLIBC_2.2.5)(64bit)
• libc.so.6(GLIBC_2.3)(64bit)
• libc.so.6(GLIBC_2.3.4)(64bit)
• libc.so.6(GLIBC_2.33)(64bit)
• libc.so.6(GLIBC_2.34)(64bit)
• libc.so.6(GLIBC_2.4)(64bit)
• libc.so.6(GLIBC_2.7)(64bit)
• libhts.so.3()(64bit)
• libm.so.6()(64bit)
• libm.so.6(GLIBC_2.2.5)(64bit)
• libm.so.6(GLIBC_2.29)(64bit)
• libncursesw.so.6()(64bit)
• libtinfo.so.6()(64bit)
• libz.so.1()(64bit)
• rpmlib(CompressedFileNames) <= 3.0.4-1
• rpmlib(FileDigests) <= 4.6.0-1
• rpmlib(PayloadFilesHavePrefix) <= 4.0-1
• rpmlib(PayloadIsZstd) <= 5.4.18-1
• rtld(GNU_HASH)

License

MIT

Changelog

* Sat Jul 22 2023 Fedora Release Engineering <releng@fedoraproject.org> - 1.15.1-3
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild
* Sat Jan 21 2023 Fedora Release Engineering <releng@fedoraproject.org> - 1.15.1-2
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild
* Mon Aug 15 2022 Jun Aruga <jaruga@redhat.com> - 1.15.1-1
  - Update to samtools version 1.15.1
* Sat Jul 23 2022 Fedora Release Engineering <releng@fedoraproject.org> - 1.13-3
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild
* Sat Jan 22 2022 Fedora Release Engineering <releng@fedoraproject.org> - 1.13-2
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild
* Fri Jul 23 2021 John Marshall <jmarshall@hey.com> - 1.13-1
  - Update to samtools version 1.13
  - Upstream now includes individual man pages for each samtools subcommand
  - misc/varfilter.py has been removed upstream, and other scripts added
* Fri Jul 23 2021 Fedora Release Engineering <releng@fedoraproject.org> - 1.9-6
  - Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild

Files

/usr/bin/ace2sam
/usr/bin/blast2sam.pl
/usr/bin/bowtie2sam.pl
/usr/bin/export2sam.pl
/usr/bin/fasta-sanitize.pl
/usr/bin/interpolate_sam.pl
/usr/bin/maq2sam-long
/usr/bin/maq2sam-short
/usr/bin/md5fa
/usr/bin/md5sum-lite
/usr/bin/novo2sam.pl
/usr/bin/plot-ampliconstats
/usr/bin/plot-bamstats
/usr/bin/psl2sam.pl
/usr/bin/sam2vcf.pl
/usr/bin/samtools
/usr/bin/samtools.pl
/usr/bin/seq_cache_populate.pl
/usr/bin/soap2sam.pl
/usr/bin/wgsim
/usr/bin/wgsim_eval.pl
/usr/bin/zoom2sam.pl
/usr/lib/.build-id
/usr/lib/.build-id/0d
/usr/lib/.build-id/0d/d03b38c557b5d32621d25bf721310321eebe6c
/usr/lib/.build-id/2e
/usr/lib/.build-id/2e/e97f8527230aea283fd6a2cab7e0730d904e7f
/usr/lib/.build-id/44
/usr/lib/.build-id/44/fa6517acd6a84d8549eae55cab9c75e39214e7
/usr/lib/.build-id/89
/usr/lib/.build-id/89/72e024e6b16776b4aa3942e09534187d6d839f
/usr/lib/.build-id/8a
/usr/lib/.build-id/8a/9257e12f945cedd4fed414ba7d89c92c96fd2f
/usr/lib/.build-id/a8
/usr/lib/.build-id/a8/ca354dae430f8315ddf2d824438379408695da
/usr/lib/.build-id/f3
/usr/lib/.build-id/f3/def55d33d617032b3409debb3480d3f6d008d7
/usr/share/doc/samtools
/usr/share/doc/samtools/AUTHORS
/usr/share/doc/samtools/ChangeLog.old
/usr/share/doc/samtools/NEWS
/usr/share/doc/samtools/examples
/usr/share/doc/samtools/examples/00README.txt
/usr/share/doc/samtools/examples/ex1.fa
/usr/share/doc/samtools/examples/ex1.sam.gz
/usr/share/doc/samtools/examples/toy.fa
/usr/share/doc/samtools/examples/toy.sam
/usr/share/licenses/samtools
/usr/share/licenses/samtools/LICENSE
/usr/share/man/man1/samtools-addreplacerg.1.gz
/usr/share/man/man1/samtools-ampliconclip.1.gz
/usr/share/man/man1/samtools-ampliconstats.1.gz
/usr/share/man/man1/samtools-bedcov.1.gz
/usr/share/man/man1/samtools-calmd.1.gz
/usr/share/man/man1/samtools-cat.1.gz
/usr/share/man/man1/samtools-collate.1.gz
/usr/share/man/man1/samtools-consensus.1.gz
/usr/share/man/man1/samtools-coverage.1.gz
/usr/share/man/man1/samtools-depad.1.gz
/usr/share/man/man1/samtools-depth.1.gz
/usr/share/man/man1/samtools-dict.1.gz
/usr/share/man/man1/samtools-faidx.1.gz
/usr/share/man/man1/samtools-fasta.1.gz
/usr/share/man/man1/samtools-fastq.1.gz
/usr/share/man/man1/samtools-fixmate.1.gz
/usr/share/man/man1/samtools-flags.1.gz
/usr/share/man/man1/samtools-flagstat.1.gz
/usr/share/man/man1/samtools-fqidx.1.gz
/usr/share/man/man1/samtools-head.1.gz
/usr/share/man/man1/samtools-idxstats.1.gz
/usr/share/man/man1/samtools-import.1.gz
/usr/share/man/man1/samtools-index.1.gz
/usr/share/man/man1/samtools-markdup.1.gz
/usr/share/man/man1/samtools-merge.1.gz
/usr/share/man/man1/samtools-mpileup.1.gz
/usr/share/man/man1/samtools-phase.1.gz
/usr/share/man/man1/samtools-quickcheck.1.gz
/usr/share/man/man1/samtools-reheader.1.gz
/usr/share/man/man1/samtools-rmdup.1.gz
/usr/share/man/man1/samtools-samples.1.gz
/usr/share/man/man1/samtools-sort.1.gz
/usr/share/man/man1/samtools-split.1.gz
/usr/share/man/man1/samtools-stats.1.gz
/usr/share/man/man1/samtools-targetcut.1.gz
/usr/share/man/man1/samtools-tview.1.gz
/usr/share/man/man1/samtools-view.1.gz
/usr/share/man/man1/samtools.1.gz
/usr/share/man/man1/wgsim.1.gz

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Fabrice Bellet, Wed Apr 9 17:50:32 2025