Index | index by Group | index by Distribution | index by Vendor | index by creation date | index by Name | Mirrors | Help | Search |
Name: R-Rsamtools | Distribution: Fedora Project |
Version: 2.18.0 | Vendor: Fedora Project |
Release: 2.fc41 | Build date: Wed Jul 17 17:40:22 2024 |
Group: Unspecified | Build host: buildvm-ppc64le-21.iad2.fedoraproject.org |
Size: 7002511 | Source RPM: R-Rsamtools-2.18.0-2.fc41.src.rpm |
Packager: Fedora Project | |
Url: http://www.bioconductor.org/packages/release/bioc/html/Rsamtools.html | |
Summary: R interface to samtools |
This package provides an interface to the 'samtools', 'bcftools', and 'tabix' utilities (see 'LICENCE') for manipulating SAM (Sequence Alignment / Map), binary variant call (BCF) and compressed indexed tab-delimited (tabix) files.
Artistic-2.0
* Wed Jul 17 2024 Fedora Release Engineering <releng@fedoraproject.org> - 2.18.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_41_Mass_Rebuild * Fri Apr 26 2024 Iñaki Úcar <iucar@fedoraproject.org> - 2.18.0-1 - Update to latest version * Thu Apr 25 2024 Iñaki Úcar <iucar@fedoraproject.org> - 2.12.0-8 - R-maint-sig mass rebuild * Sat Apr 20 2024 Miroslav Suchý <msuchy@redhat.com> - 2.12.0-7 - convert license to SPDX * Mon Jan 22 2024 Fedora Release Engineering <releng@fedoraproject.org> - 2.12.0-6 - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild * Fri Jan 19 2024 Fedora Release Engineering <releng@fedoraproject.org> - 2.12.0-5 - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild * Wed Jul 19 2023 Fedora Release Engineering <releng@fedoraproject.org> - 2.12.0-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild * Fri Apr 21 2023 Iñaki Úcar <iucar@fedoraproject.org> - 2.12.0-3 - R-maint-sig mass rebuild * Wed Jan 18 2023 Fedora Release Engineering <releng@fedoraproject.org> - 2.12.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild * Sat Sep 03 2022 Tom Callaway <spot@fedoraproject.org> - 2.12.0-1 - update to 2.12.0 - rebuild for R 4.2.1 * Wed Jul 20 2022 Fedora Release Engineering <releng@fedoraproject.org> - 2.8.0-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild
/usr/lib/.build-id /usr/lib/.build-id/ca /usr/lib/.build-id/ca/d06516e10e3490b68ba7f53b627cf9e1a36706 /usr/lib64/R/library/Rsamtools /usr/lib64/R/library/Rsamtools/DESCRIPTION /usr/lib64/R/library/Rsamtools/INDEX /usr/lib64/R/library/Rsamtools/LICENSE /usr/lib64/R/library/Rsamtools/Meta /usr/lib64/R/library/Rsamtools/Meta/Rd.rds /usr/lib64/R/library/Rsamtools/Meta/features.rds /usr/lib64/R/library/Rsamtools/Meta/hsearch.rds /usr/lib64/R/library/Rsamtools/Meta/links.rds /usr/lib64/R/library/Rsamtools/Meta/nsInfo.rds /usr/lib64/R/library/Rsamtools/Meta/package.rds /usr/lib64/R/library/Rsamtools/Meta/vignette.rds /usr/lib64/R/library/Rsamtools/NAMESPACE /usr/lib64/R/library/Rsamtools/NEWS /usr/lib64/R/library/Rsamtools/R /usr/lib64/R/library/Rsamtools/R/Rsamtools /usr/lib64/R/library/Rsamtools/R/Rsamtools.rdb /usr/lib64/R/library/Rsamtools/R/Rsamtools.rdx /usr/lib64/R/library/Rsamtools/doc /usr/lib64/R/library/Rsamtools/doc/Rsamtools-Overview.R /usr/lib64/R/library/Rsamtools/doc/Rsamtools-Overview.Rmd /usr/lib64/R/library/Rsamtools/doc/Rsamtools-Overview.html /usr/lib64/R/library/Rsamtools/doc/index.html /usr/lib64/R/library/Rsamtools/extdata /usr/lib64/R/library/Rsamtools/extdata/ce2dict1.fa /usr/lib64/R/library/Rsamtools/extdata/ce2dict1.fa.fai /usr/lib64/R/library/Rsamtools/extdata/ex1.bam /usr/lib64/R/library/Rsamtools/extdata/ex1.bam.bai /usr/lib64/R/library/Rsamtools/extdata/ex1.bcf.gz /usr/lib64/R/library/Rsamtools/extdata/ex1.bcf.gz.csi /usr/lib64/R/library/Rsamtools/extdata/ex1.sam /usr/lib64/R/library/Rsamtools/extdata/ex1.vcf.gz /usr/lib64/R/library/Rsamtools/extdata/ex1.vcf.gz.csi /usr/lib64/R/library/Rsamtools/extdata/example.gtf.gz /usr/lib64/R/library/Rsamtools/extdata/example.gtf.gz.tbi /usr/lib64/R/library/Rsamtools/extdata/example_from_SAM_Spec.bam /usr/lib64/R/library/Rsamtools/extdata/example_from_SAM_Spec.bam.bai /usr/lib64/R/library/Rsamtools/extdata/example_from_SAM_Spec.sam /usr/lib64/R/library/Rsamtools/extdata/no_which_buffered_pileup.bam /usr/lib64/R/library/Rsamtools/extdata/no_which_buffered_pileup.bam.bai /usr/lib64/R/library/Rsamtools/extdata/no_which_buffered_pileup.sam /usr/lib64/R/library/Rsamtools/extdata/no_which_whole_file.bam /usr/lib64/R/library/Rsamtools/extdata/no_which_whole_file.bam.bai /usr/lib64/R/library/Rsamtools/extdata/no_which_whole_file.sam /usr/lib64/R/library/Rsamtools/extdata/olaps.Rda /usr/lib64/R/library/Rsamtools/extdata/pileup.txt /usr/lib64/R/library/Rsamtools/extdata/querybins.bam /usr/lib64/R/library/Rsamtools/extdata/querybins.bam.bai /usr/lib64/R/library/Rsamtools/extdata/querybins.sam /usr/lib64/R/library/Rsamtools/extdata/revbins.bam /usr/lib64/R/library/Rsamtools/extdata/revbins.bam.bai /usr/lib64/R/library/Rsamtools/extdata/revbins.sam /usr/lib64/R/library/Rsamtools/extdata/samtools-github.txt /usr/lib64/R/library/Rsamtools/extdata/slxMaq09_urls.txt /usr/lib64/R/library/Rsamtools/extdata/tagfilter.bam /usr/lib64/R/library/Rsamtools/extdata/tagfilter.bam.bai /usr/lib64/R/library/Rsamtools/extdata/tagfilter.sam /usr/lib64/R/library/Rsamtools/extdata/tiny.bam /usr/lib64/R/library/Rsamtools/extdata/tiny.bam.bai /usr/lib64/R/library/Rsamtools/extdata/tiny.sam /usr/lib64/R/library/Rsamtools/extdata/tophat /usr/lib64/R/library/Rsamtools/extdata/tophat/README /usr/lib64/R/library/Rsamtools/extdata/tophat/accepted_hits.sam /usr/lib64/R/library/Rsamtools/extdata/tophat/coverage.wig /usr/lib64/R/library/Rsamtools/extdata/tophat/junctions.bed /usr/lib64/R/library/Rsamtools/help /usr/lib64/R/library/Rsamtools/help/+5B+2CBamViews+2CANY+2CANY-method.html /usr/lib64/R/library/Rsamtools/help/+5B+2CBamViews+2CANY+2Cmissing-method.html /usr/lib64/R/library/Rsamtools/help/+5B+2CBamViews+2Cmissing+2CANY-method.html /usr/lib64/R/library/Rsamtools/help/AnIndex /usr/lib64/R/library/Rsamtools/help/ApplyPileupsParam-class.html /usr/lib64/R/library/Rsamtools/help/ApplyPileupsParam.html /usr/lib64/R/library/Rsamtools/help/BamFile-class.html /usr/lib64/R/library/Rsamtools/help/BamFile.html /usr/lib64/R/library/Rsamtools/help/BamFileList-class.html /usr/lib64/R/library/Rsamtools/help/BamFileList.html /usr/lib64/R/library/Rsamtools/help/BamSampler-class.html /usr/lib64/R/library/Rsamtools/help/BamSampler.html /usr/lib64/R/library/Rsamtools/help/BamViews+2CGRanges-method.html /usr/lib64/R/library/Rsamtools/help/BamViews+2Cmissing-method.html /usr/lib64/R/library/Rsamtools/help/BamViews-class.html /usr/lib64/R/library/Rsamtools/help/BamViews.html /usr/lib64/R/library/Rsamtools/help/BcfFile-class.html /usr/lib64/R/library/Rsamtools/help/BcfFile.html /usr/lib64/R/library/Rsamtools/help/BcfFileList-class.html /usr/lib64/R/library/Rsamtools/help/BcfFileList.html /usr/lib64/R/library/Rsamtools/help/FLAG_BITNAMES.html /usr/lib64/R/library/Rsamtools/help/FaFile-class.html /usr/lib64/R/library/Rsamtools/help/FaFile.html /usr/lib64/R/library/Rsamtools/help/FaFileList-class.html /usr/lib64/R/library/Rsamtools/help/FaFileList.html /usr/lib64/R/library/Rsamtools/help/PileupFiles+2Ccharacter-method.html /usr/lib64/R/library/Rsamtools/help/PileupFiles+2Clist-method.html /usr/lib64/R/library/Rsamtools/help/PileupFiles-class.html /usr/lib64/R/library/Rsamtools/help/PileupFiles.html /usr/lib64/R/library/Rsamtools/help/PileupParam-class.html /usr/lib64/R/library/Rsamtools/help/PileupParam.html /usr/lib64/R/library/Rsamtools/help/Rsamtools-package.html /usr/lib64/R/library/Rsamtools/help/Rsamtools.html /usr/lib64/R/library/Rsamtools/help/Rsamtools.rdb /usr/lib64/R/library/Rsamtools/help/Rsamtools.rdx /usr/lib64/R/library/Rsamtools/help/RsamtoolsFile-class.html /usr/lib64/R/library/Rsamtools/help/RsamtoolsFile.html /usr/lib64/R/library/Rsamtools/help/RsamtoolsFileList-class.html /usr/lib64/R/library/Rsamtools/help/RsamtoolsFileList.html /usr/lib64/R/library/Rsamtools/help/ScanBVcfParam-class.html /usr/lib64/R/library/Rsamtools/help/ScanBamParam+2CANY-method.html /usr/lib64/R/library/Rsamtools/help/ScanBamParam+2CGRanges-method.html /usr/lib64/R/library/Rsamtools/help/ScanBamParam+2CIntegerRangesList-method.html /usr/lib64/R/library/Rsamtools/help/ScanBamParam+2Cmissing-method.html /usr/lib64/R/library/Rsamtools/help/ScanBamParam-class.html /usr/lib64/R/library/Rsamtools/help/ScanBamParam.html /usr/lib64/R/library/Rsamtools/help/ScanBcfParam+2CGRanges-method.html /usr/lib64/R/library/Rsamtools/help/ScanBcfParam+2CGRangesList-method.html /usr/lib64/R/library/Rsamtools/help/ScanBcfParam+2CIntegerRangesList-method.html /usr/lib64/R/library/Rsamtools/help/ScanBcfParam+2Cmissing-method.html /usr/lib64/R/library/Rsamtools/help/ScanBcfParam-class.html /usr/lib64/R/library/Rsamtools/help/ScanBcfParam.html /usr/lib64/R/library/Rsamtools/help/TabixFile-class.html /usr/lib64/R/library/Rsamtools/help/TabixFile.html /usr/lib64/R/library/Rsamtools/help/TabixFileList-class.html /usr/lib64/R/library/Rsamtools/help/TabixFileList.html /usr/lib64/R/library/Rsamtools/help/aliases.rds /usr/lib64/R/library/Rsamtools/help/applyPileups+2CPileupFiles+2CApplyPileupsParam-method.html /usr/lib64/R/library/Rsamtools/help/applyPileups+2CPileupFiles+2Cmissing-method.html /usr/lib64/R/library/Rsamtools/help/applyPileups.html /usr/lib64/R/library/Rsamtools/help/asBam+2Ccharacter-method.html /usr/lib64/R/library/Rsamtools/help/asBam.html /usr/lib64/R/library/Rsamtools/help/asBcf+2Ccharacter-method.html /usr/lib64/R/library/Rsamtools/help/asBcf.html /usr/lib64/R/library/Rsamtools/help/asMates+2CBamFile-method.html /usr/lib64/R/library/Rsamtools/help/asMates+2CBamFileList-method.html /usr/lib64/R/library/Rsamtools/help/asMates+3C-+2CBamFile-method.html /usr/lib64/R/library/Rsamtools/help/asMates+3C-+2CBamFileList-method.html /usr/lib64/R/library/Rsamtools/help/asMates+3C-.html /usr/lib64/R/library/Rsamtools/help/asMates.html /usr/lib64/R/library/Rsamtools/help/asSam+2Ccharacter-method.html /usr/lib64/R/library/Rsamtools/help/asSam.html /usr/lib64/R/library/Rsamtools/help/bamDirname+3C-.html /usr/lib64/R/library/Rsamtools/help/bamExperiment.html /usr/lib64/R/library/Rsamtools/help/bamFlag+3C-.html /usr/lib64/R/library/Rsamtools/help/bamFlag.html /usr/lib64/R/library/Rsamtools/help/bamFlagAND.html /usr/lib64/R/library/Rsamtools/help/bamFlagAsBitMatrix.html /usr/lib64/R/library/Rsamtools/help/bamFlagTest.html /usr/lib64/R/library/Rsamtools/help/bamIndicies.html /usr/lib64/R/library/Rsamtools/help/bamMapqFilter+3C-.html /usr/lib64/R/library/Rsamtools/help/bamMapqFilter.html /usr/lib64/R/library/Rsamtools/help/bamPaths.html /usr/lib64/R/library/Rsamtools/help/bamRanges+3C-.html /usr/lib64/R/library/Rsamtools/help/bamRanges.html /usr/lib64/R/library/Rsamtools/help/bamReverseComplement+3C-.html /usr/lib64/R/library/Rsamtools/help/bamReverseComplement.html /usr/lib64/R/library/Rsamtools/help/bamSamples+3C-.html /usr/lib64/R/library/Rsamtools/help/bamSamples.html /usr/lib64/R/library/Rsamtools/help/bamSimpleCigar+3C-.html /usr/lib64/R/library/Rsamtools/help/bamSimpleCigar.html /usr/lib64/R/library/Rsamtools/help/bamTag+3C-.html /usr/lib64/R/library/Rsamtools/help/bamTag.html /usr/lib64/R/library/Rsamtools/help/bamTagFilter+3C-.html /usr/lib64/R/library/Rsamtools/help/bamTagFilter.html /usr/lib64/R/library/Rsamtools/help/bamWhat+3C-.html /usr/lib64/R/library/Rsamtools/help/bamWhat.html /usr/lib64/R/library/Rsamtools/help/bamWhich+3C-+2CScanBamParam+2CANY-method.html /usr/lib64/R/library/Rsamtools/help/bamWhich+3C-+2CScanBamParam+2CGRanges-method.html /usr/lib64/R/library/Rsamtools/help/bamWhich+3C-+2CScanBamParam+2CIntegerRangesList-method.html /usr/lib64/R/library/Rsamtools/help/bamWhich+3C-.html /usr/lib64/R/library/Rsamtools/help/bamWhich.html /usr/lib64/R/library/Rsamtools/help/bcfFixed.html /usr/lib64/R/library/Rsamtools/help/bcfGeno.html /usr/lib64/R/library/Rsamtools/help/bcfInfo.html /usr/lib64/R/library/Rsamtools/help/bcfMode.html /usr/lib64/R/library/Rsamtools/help/bcfSamples.html /usr/lib64/R/library/Rsamtools/help/bcfTrimEmpty.html /usr/lib64/R/library/Rsamtools/help/bcfWhich.html /usr/lib64/R/library/Rsamtools/help/bgzip.html /usr/lib64/R/library/Rsamtools/help/bgzipTabix.html /usr/lib64/R/library/Rsamtools/help/bzfile-class.html /usr/lib64/R/library/Rsamtools/help/close.BamFile.html /usr/lib64/R/library/Rsamtools/help/close.BcfFile.html /usr/lib64/R/library/Rsamtools/help/close.FaFile.html /usr/lib64/R/library/Rsamtools/help/close.RsamtoolsFileList.html /usr/lib64/R/library/Rsamtools/help/close.TabixFile.html /usr/lib64/R/library/Rsamtools/help/countBam+2CBamFile-method.html /usr/lib64/R/library/Rsamtools/help/countBam+2CBamFileList-method.html /usr/lib64/R/library/Rsamtools/help/countBam+2CBamViews-method.html /usr/lib64/R/library/Rsamtools/help/countBam+2Ccharacter-method.html /usr/lib64/R/library/Rsamtools/help/countBam.html /usr/lib64/R/library/Rsamtools/help/countFa+2CFaFile-method.html /usr/lib64/R/library/Rsamtools/help/countFa+2Ccharacter-method.html /usr/lib64/R/library/Rsamtools/help/countFa.html /usr/lib64/R/library/Rsamtools/help/countTabix.html /usr/lib64/R/library/Rsamtools/help/cycle_bins.html /usr/lib64/R/library/Rsamtools/help/defunct.html /usr/lib64/R/library/Rsamtools/help/deprecated.html /usr/lib64/R/library/Rsamtools/help/dim+2CBamViews-method.html /usr/lib64/R/library/Rsamtools/help/dimnames+2CBamViews-method.html /usr/lib64/R/library/Rsamtools/help/dimnames+3C-+2CBamViews+2CANY-method.html /usr/lib64/R/library/Rsamtools/help/dimnames+3C-+2CBamViews-method.html /usr/lib64/R/library/Rsamtools/help/distinguish_nucleotides.html /usr/lib64/R/library/Rsamtools/help/distinguish_strands.html /usr/lib64/R/library/Rsamtools/help/fifo-class.html /usr/lib64/R/library/Rsamtools/help/filterBam+2CBamFile-method.html /usr/lib64/R/library/Rsamtools/help/filterBam+2Ccharacter-method.html /usr/lib64/R/library/Rsamtools/help/filterBam.html /usr/lib64/R/library/Rsamtools/help/getSeq+2CFaFile-method.html /usr/lib64/R/library/Rsamtools/help/getSeq+2CFaFileList-method.html /usr/lib64/R/library/Rsamtools/help/gzfile-class.html /usr/lib64/R/library/Rsamtools/help/gzindex+2CFaFile-method.html /usr/lib64/R/library/Rsamtools/help/gzindex+2CFaFileList-method.html /usr/lib64/R/library/Rsamtools/help/gzindex+3C-+2CFaFile-method.html /usr/lib64/R/library/Rsamtools/help/gzindex+3C-+2CFaFileList-method.html /usr/lib64/R/library/Rsamtools/help/gzindex+3C-.html /usr/lib64/R/library/Rsamtools/help/gzindex.html /usr/lib64/R/library/Rsamtools/help/hasUnmappedMate.html /usr/lib64/R/library/Rsamtools/help/headerTabix+2CTabixFile-method.html /usr/lib64/R/library/Rsamtools/help/headerTabix+2Ccharacter-method.html /usr/lib64/R/library/Rsamtools/help/headerTabix.html /usr/lib64/R/library/Rsamtools/help/idxstatsBam+2CBamFile-method.html /usr/lib64/R/library/Rsamtools/help/idxstatsBam+2Ccharacter-method.html /usr/lib64/R/library/Rsamtools/help/idxstatsBam.html /usr/lib64/R/library/Rsamtools/help/ignore_query_Ns.html /usr/lib64/R/library/Rsamtools/help/include_deletions.html /usr/lib64/R/library/Rsamtools/help/include_insertions.html /usr/lib64/R/library/Rsamtools/help/index+2CRsamtoolsFile-method.html /usr/lib64/R/library/Rsamtools/help/index+2CRsamtoolsFileList-method.html /usr/lib64/R/library/Rsamtools/help/index+3C-+2CRsamtoolsFile-method.html /usr/lib64/R/library/Rsamtools/help/index+3C-+2CRsamtoolsFileList-method.html /usr/lib64/R/library/Rsamtools/help/index+3C-.html /usr/lib64/R/library/Rsamtools/help/index.html /usr/lib64/R/library/Rsamtools/help/indexBam+2CBamFile-method.html /usr/lib64/R/library/Rsamtools/help/indexBam+2Ccharacter-method.html /usr/lib64/R/library/Rsamtools/help/indexBam.html /usr/lib64/R/library/Rsamtools/help/indexBcf+2CBcfFile-method.html /usr/lib64/R/library/Rsamtools/help/indexBcf+2Ccharacter-method.html /usr/lib64/R/library/Rsamtools/help/indexBcf.html /usr/lib64/R/library/Rsamtools/help/indexFa+2CFaFile-method.html /usr/lib64/R/library/Rsamtools/help/indexFa+2Ccharacter-method.html /usr/lib64/R/library/Rsamtools/help/indexFa.html /usr/lib64/R/library/Rsamtools/help/indexTabix.html /usr/lib64/R/library/Rsamtools/help/isDuplicate.html /usr/lib64/R/library/Rsamtools/help/isFirstMateRead.html /usr/lib64/R/library/Rsamtools/help/isIncomplete+2CBamFile-method.html /usr/lib64/R/library/Rsamtools/help/isMateMinusStrand.html /usr/lib64/R/library/Rsamtools/help/isMinusStrand.html /usr/lib64/R/library/Rsamtools/help/isNotPassingQualityControls.html /usr/lib64/R/library/Rsamtools/help/isNotPrimaryRead.html /usr/lib64/R/library/Rsamtools/help/isOpen+2CBamFile-method.html /usr/lib64/R/library/Rsamtools/help/isOpen+2CBcfFile-method.html /usr/lib64/R/library/Rsamtools/help/isOpen+2CFaFile-method.html /usr/lib64/R/library/Rsamtools/help/isOpen+2CPileupFiles-method.html /usr/lib64/R/library/Rsamtools/help/isOpen+2CRsamtoolsFile-method.html /usr/lib64/R/library/Rsamtools/help/isOpen+2CRsamtoolsFileList-method.html /usr/lib64/R/library/Rsamtools/help/isOpen+2CTabixFile-method.html /usr/lib64/R/library/Rsamtools/help/isPaired.html /usr/lib64/R/library/Rsamtools/help/isProperPair.html /usr/lib64/R/library/Rsamtools/help/isSecondMateRead.html /usr/lib64/R/library/Rsamtools/help/isSecondaryAlignment.html /usr/lib64/R/library/Rsamtools/help/isUnmappedQuery.html /usr/lib64/R/library/Rsamtools/help/left_bins.html /usr/lib64/R/library/Rsamtools/help/max_depth.html /usr/lib64/R/library/Rsamtools/help/mergeBam+2CBamFileList-method.html /usr/lib64/R/library/Rsamtools/help/mergeBam+2Ccharacter-method.html /usr/lib64/R/library/Rsamtools/help/mergeBam.html /usr/lib64/R/library/Rsamtools/help/min_base_quality.html /usr/lib64/R/library/Rsamtools/help/min_mapq.html /usr/lib64/R/library/Rsamtools/help/min_minor_allele_depth.html /usr/lib64/R/library/Rsamtools/help/min_nucleotide_depth.html /usr/lib64/R/library/Rsamtools/help/names+2CBamViews-method.html /usr/lib64/R/library/Rsamtools/help/names+2CRsamtoolsFileList-method.html /usr/lib64/R/library/Rsamtools/help/names+3C-+2CBamViews-method.html /usr/lib64/R/library/Rsamtools/help/obeyQname+2CBamFile-method.html /usr/lib64/R/library/Rsamtools/help/obeyQname+2CBamFileList-method.html /usr/lib64/R/library/Rsamtools/help/obeyQname+3C-+2CBamFile-method.html /usr/lib64/R/library/Rsamtools/help/obeyQname+3C-+2CBamFileList-method.html /usr/lib64/R/library/Rsamtools/help/obeyQname+3C-.html /usr/lib64/R/library/Rsamtools/help/obeyQname.html /usr/lib64/R/library/Rsamtools/help/open.BamFile.html /usr/lib64/R/library/Rsamtools/help/open.BcfFile.html /usr/lib64/R/library/Rsamtools/help/open.FaFile.html /usr/lib64/R/library/Rsamtools/help/open.RsamtoolsFileList.html /usr/lib64/R/library/Rsamtools/help/open.TabixFile.html /usr/lib64/R/library/Rsamtools/help/path+2CRsamtoolsFile-method.html /usr/lib64/R/library/Rsamtools/help/path+2CRsamtoolsFileList-method.html /usr/lib64/R/library/Rsamtools/help/path.html /usr/lib64/R/library/Rsamtools/help/paths.rds /usr/lib64/R/library/Rsamtools/help/phred2ASCIIOffset.html /usr/lib64/R/library/Rsamtools/help/pileup+2CBamFile-method.html /usr/lib64/R/library/Rsamtools/help/pileup+2Ccharacter-method.html /usr/lib64/R/library/Rsamtools/help/pileup.html /usr/lib64/R/library/Rsamtools/help/pipe-class.html /usr/lib64/R/library/Rsamtools/help/plpFiles.html /usr/lib64/R/library/Rsamtools/help/plpFlag+3C-.html /usr/lib64/R/library/Rsamtools/help/plpFlag.html /usr/lib64/R/library/Rsamtools/help/plpMaxDepth+3C-.html /usr/lib64/R/library/Rsamtools/help/plpMaxDepth.html /usr/lib64/R/library/Rsamtools/help/plpMinBaseQuality+3C-.html /usr/lib64/R/library/Rsamtools/help/plpMinBaseQuality.html /usr/lib64/R/library/Rsamtools/help/plpMinDepth+3C-.html /usr/lib64/R/library/Rsamtools/help/plpMinDepth.html /usr/lib64/R/library/Rsamtools/help/plpMinMapQuality+3C-.html /usr/lib64/R/library/Rsamtools/help/plpMinMapQuality.html /usr/lib64/R/library/Rsamtools/help/plpParam.html /usr/lib64/R/library/Rsamtools/help/plpWhat+3C-.html /usr/lib64/R/library/Rsamtools/help/plpWhat.html /usr/lib64/R/library/Rsamtools/help/plpWhich+3C-.html /usr/lib64/R/library/Rsamtools/help/plpWhich.html /usr/lib64/R/library/Rsamtools/help/plpYieldAll+3C-.html /usr/lib64/R/library/Rsamtools/help/plpYieldAll.html /usr/lib64/R/library/Rsamtools/help/plpYieldBy+3C-.html /usr/lib64/R/library/Rsamtools/help/plpYieldBy.html /usr/lib64/R/library/Rsamtools/help/plpYieldSize+3C-.html /usr/lib64/R/library/Rsamtools/help/plpYieldSize.html /usr/lib64/R/library/Rsamtools/help/qnamePrefixEnd+2CBamFile-method.html /usr/lib64/R/library/Rsamtools/help/qnamePrefixEnd+2CBamFileList-method.html /usr/lib64/R/library/Rsamtools/help/qnamePrefixEnd+3C-+2CBamFile-method.html /usr/lib64/R/library/Rsamtools/help/qnamePrefixEnd+3C-+2CBamFileList-method.html /usr/lib64/R/library/Rsamtools/help/qnamePrefixEnd+3C-.html /usr/lib64/R/library/Rsamtools/help/qnamePrefixEnd.html /usr/lib64/R/library/Rsamtools/help/qnameSuffixStart+2CBamFile-method.html /usr/lib64/R/library/Rsamtools/help/qnameSuffixStart+2CBamFileList-method.html /usr/lib64/R/library/Rsamtools/help/qnameSuffixStart+3C-+2CBamFile-method.html /usr/lib64/R/library/Rsamtools/help/qnameSuffixStart+3C-+2CBamFileList-method.html /usr/lib64/R/library/Rsamtools/help/qnameSuffixStart+3C-.html /usr/lib64/R/library/Rsamtools/help/qnameSuffixStart.html /usr/lib64/R/library/Rsamtools/help/query_bins.html /usr/lib64/R/library/Rsamtools/help/quickBamCounts.html /usr/lib64/R/library/Rsamtools/help/quickBamFlagSummary+2CBamFile-method.html /usr/lib64/R/library/Rsamtools/help/quickBamFlagSummary+2Ccharacter-method.html /usr/lib64/R/library/Rsamtools/help/quickBamFlagSummary+2Clist-method.html /usr/lib64/R/library/Rsamtools/help/quickBamFlagSummary.html /usr/lib64/R/library/Rsamtools/help/quickCountBam.html /usr/lib64/R/library/Rsamtools/help/razip.html /usr/lib64/R/library/Rsamtools/help/readPileup+2Ccharacter-method.html /usr/lib64/R/library/Rsamtools/help/readPileup+2Cconnection-method.html /usr/lib64/R/library/Rsamtools/help/readPileup.html /usr/lib64/R/library/Rsamtools/help/scanBam+2CBamFile-method.html /usr/lib64/R/library/Rsamtools/help/scanBam+2CBamSampler-method.html /usr/lib64/R/library/Rsamtools/help/scanBam+2CBamViews-method.html /usr/lib64/R/library/Rsamtools/help/scanBam+2Ccharacter-method.html /usr/lib64/R/library/Rsamtools/help/scanBam.html /usr/lib64/R/library/Rsamtools/help/scanBamFlag.html /usr/lib64/R/library/Rsamtools/help/scanBamHeader+2CBamFile-method.html /usr/lib64/R/library/Rsamtools/help/scanBamHeader+2Ccharacter-method.html /usr/lib64/R/library/Rsamtools/help/scanBamHeader.html /usr/lib64/R/library/Rsamtools/help/scanBamWhat.html /usr/lib64/R/library/Rsamtools/help/scanBcf+2CBcfFile-method.html /usr/lib64/R/library/Rsamtools/help/scanBcf+2Ccharacter-method.html /usr/lib64/R/library/Rsamtools/help/scanBcf.html /usr/lib64/R/library/Rsamtools/help/scanBcfHeader+2CBcfFile-method.html /usr/lib64/R/library/Rsamtools/help/scanBcfHeader+2Ccharacter-method.html /usr/lib64/R/library/Rsamtools/help/scanBcfHeader.html /usr/lib64/R/library/Rsamtools/help/scanFa+2CFaFile+2CGRanges-method.html /usr/lib64/R/library/Rsamtools/help/scanFa+2CFaFile+2CIntegerRangesList-method.html /usr/lib64/R/library/Rsamtools/help/scanFa+2CFaFile+2Cmissing-method.html /usr/lib64/R/library/Rsamtools/help/scanFa+2Ccharacter+2CGRanges-method.html /usr/lib64/R/library/Rsamtools/help/scanFa+2Ccharacter+2CIntegerRangesList-method.html /usr/lib64/R/library/Rsamtools/help/scanFa+2Ccharacter+2Cmissing-method.html /usr/lib64/R/library/Rsamtools/help/scanFa.html /usr/lib64/R/library/Rsamtools/help/scanFaIndex+2CFaFile-method.html /usr/lib64/R/library/Rsamtools/help/scanFaIndex+2CFaFileList-method.html /usr/lib64/R/library/Rsamtools/help/scanFaIndex+2Ccharacter-method.html /usr/lib64/R/library/Rsamtools/help/scanFaIndex.html /usr/lib64/R/library/Rsamtools/help/scanTabix+2CTabixFile+2CGRanges-method.html /usr/lib64/R/library/Rsamtools/help/scanTabix+2CTabixFile+2CIntegerRangesList-method.html /usr/lib64/R/library/Rsamtools/help/scanTabix+2CTabixFile+2Cmissing-method.html /usr/lib64/R/library/Rsamtools/help/scanTabix+2Ccharacter+2CANY-method.html /usr/lib64/R/library/Rsamtools/help/scanTabix+2Ccharacter+2CGRanges-method.html /usr/lib64/R/library/Rsamtools/help/scanTabix+2Ccharacter+2CIntegerRangesList-method.html /usr/lib64/R/library/Rsamtools/help/scanTabix+2Ccharacter+2Cmissing-method.html /usr/lib64/R/library/Rsamtools/help/scanTabix.html /usr/lib64/R/library/Rsamtools/help/seqinfo+2CBamFile-method.html /usr/lib64/R/library/Rsamtools/help/seqinfo+2CBamFileList-method.html /usr/lib64/R/library/Rsamtools/help/seqinfo+2CFaFile-method.html /usr/lib64/R/library/Rsamtools/help/seqnamesTabix+2CTabixFile-method.html /usr/lib64/R/library/Rsamtools/help/seqnamesTabix+2Ccharacter-method.html /usr/lib64/R/library/Rsamtools/help/seqnamesTabix.html /usr/lib64/R/library/Rsamtools/help/show+2CApplyPileupsParam-method.html /usr/lib64/R/library/Rsamtools/help/show+2CBamFile-method.html /usr/lib64/R/library/Rsamtools/help/show+2CBamFileList-method.html /usr/lib64/R/library/Rsamtools/help/show+2CBamSampler-method.html /usr/lib64/R/library/Rsamtools/help/show+2CBamViews-method.html /usr/lib64/R/library/Rsamtools/help/show+2CFaFile-method.html /usr/lib64/R/library/Rsamtools/help/show+2CPileupFiles-method.html /usr/lib64/R/library/Rsamtools/help/show+2CPileupParam-method.html /usr/lib64/R/library/Rsamtools/help/show+2CRsamtoolsFile-method.html /usr/lib64/R/library/Rsamtools/help/show+2CScanBVcfParam-method.html /usr/lib64/R/library/Rsamtools/help/show+2CScanBamParam-method.html /usr/lib64/R/library/Rsamtools/help/sortBam+2CBamFile-method.html /usr/lib64/R/library/Rsamtools/help/sortBam+2Ccharacter-method.html /usr/lib64/R/library/Rsamtools/help/sortBam.html /usr/lib64/R/library/Rsamtools/help/testPairedEndBam+2CBamFile-method.html /usr/lib64/R/library/Rsamtools/help/testPairedEndBam+2Ccharacter-method.html /usr/lib64/R/library/Rsamtools/help/testPairedEndBam.html /usr/lib64/R/library/Rsamtools/help/unz-class.html /usr/lib64/R/library/Rsamtools/help/url-class.html /usr/lib64/R/library/Rsamtools/help/yieldSize+2CRsamtoolsFile-method.html /usr/lib64/R/library/Rsamtools/help/yieldSize+2CRsamtoolsFileList-method.html /usr/lib64/R/library/Rsamtools/help/yieldSize+3C-+2CRsamtoolsFile-method.html /usr/lib64/R/library/Rsamtools/help/yieldSize+3C-+2CRsamtoolsFileList-method.html /usr/lib64/R/library/Rsamtools/help/yieldSize+3C-.html /usr/lib64/R/library/Rsamtools/help/yieldSize.html /usr/lib64/R/library/Rsamtools/help/yieldTabix+2CTabixFile-method.html /usr/lib64/R/library/Rsamtools/help/yieldTabix.html /usr/lib64/R/library/Rsamtools/help/zip.html /usr/lib64/R/library/Rsamtools/html /usr/lib64/R/library/Rsamtools/html/00Index.html /usr/lib64/R/library/Rsamtools/html/ApplyPileupsParam-class.html /usr/lib64/R/library/Rsamtools/html/BamFile-class.html /usr/lib64/R/library/Rsamtools/html/BamViews-class.html /usr/lib64/R/library/Rsamtools/html/BcfFile-class.html /usr/lib64/R/library/Rsamtools/html/FaFile-class.html /usr/lib64/R/library/Rsamtools/html/PileupFiles-class.html /usr/lib64/R/library/Rsamtools/html/R.css /usr/lib64/R/library/Rsamtools/html/Rsamtools-package.html /usr/lib64/R/library/Rsamtools/html/RsamtoolsFile-class.html /usr/lib64/R/library/Rsamtools/html/RsamtoolsFileList-class.html /usr/lib64/R/library/Rsamtools/html/ScanBamParam-class.html /usr/lib64/R/library/Rsamtools/html/ScanBcfParam-class.html /usr/lib64/R/library/Rsamtools/html/TabixFile-class.html /usr/lib64/R/library/Rsamtools/html/applyPileups.html /usr/lib64/R/library/Rsamtools/html/defunct.html /usr/lib64/R/library/Rsamtools/html/deprecated.html /usr/lib64/R/library/Rsamtools/html/headerTabix.html /usr/lib64/R/library/Rsamtools/html/indexTabix.html /usr/lib64/R/library/Rsamtools/html/pileup.html /usr/lib64/R/library/Rsamtools/html/quickBamFlagSummary.html /usr/lib64/R/library/Rsamtools/html/readPileup.html /usr/lib64/R/library/Rsamtools/html/scanBam.html /usr/lib64/R/library/Rsamtools/html/scanBcf.html /usr/lib64/R/library/Rsamtools/html/scanFa.html /usr/lib64/R/library/Rsamtools/html/scanTabix.html /usr/lib64/R/library/Rsamtools/html/seqnamesTabix.html /usr/lib64/R/library/Rsamtools/html/testPairedEndBam.html /usr/lib64/R/library/Rsamtools/html/zip.html /usr/lib64/R/library/Rsamtools/libs /usr/lib64/R/library/Rsamtools/libs/Rsamtools.so /usr/lib64/R/library/Rsamtools/scripts /usr/lib64/R/library/Rsamtools/scripts/BamViews-1000g.R /usr/lib64/R/library/Rsamtools/scripts/features.R /usr/lib64/R/library/Rsamtools/scripts/remote_test.R /usr/lib64/R/library/Rsamtools/scripts/update-samtools.sh /usr/lib64/R/library/Rsamtools/unitTests /usr/lib64/R/library/Rsamtools/unitTests/cases /usr/lib64/R/library/Rsamtools/unitTests/cases/RNEXT.bam /usr/lib64/R/library/Rsamtools/unitTests/cases/ex1.sam.gz /usr/lib64/R/library/Rsamtools/unitTests/cases/ex1_noindex.bam /usr/lib64/R/library/Rsamtools/unitTests/cases/ex1_shuf1000.bam /usr/lib64/R/library/Rsamtools/unitTests/cases/ex1_shuf1000.bam.bai /usr/lib64/R/library/Rsamtools/unitTests/cases/ex1_unsort.bam /usr/lib64/R/library/Rsamtools/unitTests/cases/ex1_zero_index.bam.bai /usr/lib64/R/library/Rsamtools/unitTests/cases/no_SAMPLE_header.vcf.gz /usr/lib64/R/library/Rsamtools/unitTests/cases/no_header_line.vcf.gz /usr/lib64/R/library/Rsamtools/unitTests/cases/pileup-no-stars.txt /usr/lib64/R/library/Rsamtools/unitTests/cases/plp_refskip.bam /usr/lib64/R/library/Rsamtools/unitTests/cases/plp_refskip.bam.bai /usr/lib64/R/library/Rsamtools/unitTests/test_BamFile.R /usr/lib64/R/library/Rsamtools/unitTests/test_BamViews.R /usr/lib64/R/library/Rsamtools/unitTests/test_BcfFile.R /usr/lib64/R/library/Rsamtools/unitTests/test_FaFile.R /usr/lib64/R/library/Rsamtools/unitTests/test_RsamtoolsFile.R /usr/lib64/R/library/Rsamtools/unitTests/test_TabixFile.R /usr/lib64/R/library/Rsamtools/unitTests/test_applyPileups.R /usr/lib64/R/library/Rsamtools/unitTests/test_asBam.R /usr/lib64/R/library/Rsamtools/unitTests/test_bam.R /usr/lib64/R/library/Rsamtools/unitTests/test_bam_count.R /usr/lib64/R/library/Rsamtools/unitTests/test_bam_header.R /usr/lib64/R/library/Rsamtools/unitTests/test_compression.R /usr/lib64/R/library/Rsamtools/unitTests/test_mapqfilter.R /usr/lib64/R/library/Rsamtools/unitTests/test_phred2ASCIIOffset.R /usr/lib64/R/library/Rsamtools/unitTests/test_pileup_nowhich.R /usr/lib64/R/library/Rsamtools/unitTests/test_pileup_querybins.R /usr/lib64/R/library/Rsamtools/unitTests/test_pileup_revbins.R /usr/lib64/R/library/Rsamtools/unitTests/test_pileup_single_range.R /usr/lib64/R/library/Rsamtools/unitTests/test_readPileup.R /usr/lib64/R/library/Rsamtools/unitTests/test_scanBamFlag.R /usr/lib64/R/library/Rsamtools/unitTests/test_sortBam_test.R /usr/lib64/R/library/Rsamtools/unitTests/test_tagfilter.R /usr/lib64/R/library/Rsamtools/unitTests/test_testPairedEndBam.R /usr/lib64/R/library/Rsamtools/unitTests/test_utilities.R
Generated by rpm2html 1.8.1
Fabrice Bellet, Wed Sep 11 04:58:29 2024