Fedora 40 for s390x : / usr /lib64 /R /library /GenomicAlignments /help

• +5B+5B+2CGAlignmentPairs+2CANY+2CANY-method.html
• AnIndex
• CIGAR_OPS.html
• GAlignmentPairs-class.html
• GAlignmentPairs.html
• GAlignments-class.html
• GAlignments.html
• GAlignmentsList-class.html
• GAlignmentsList.html
• GappedReads-class.html
• GappedReads.html
• GenomicAlignments.rdb
• GenomicAlignments.rdx
• IntersectionNotEmpty.html
• IntersectionStrict.html
• Lencoding.html
• Lnjunc.html
• Loffset+2COverlapEncodings-method.html
• Loffset.html
• NATURAL_INTRON_MOTIFS.html
• OverlapEncodings-class.html
• OverlapEncodings.html
• Rencoding.html
• Rnjunc.html
• Roffset+2COverlapEncodings-method.html
• Roffset.html
• Union.html
• aliases.rds
• alphabetFrequencyFromBam.html
• as.data.frame+2CGAlignmentPairs-method.html
• as.data.frame+2CGAlignments-method.html
• as.data.frame+2COverlapEncodings-method.html
• as.data.frame.OverlapEncodings.html
• bindROWS+2CGAlignmentPairs-method.html
• bindROWS+2CGAlignments-method.html
• c+2CGappedReads-method.html
• cigar+2CGAlignments-method.html
• cigar+2CGAlignmentsList-method.html
• cigar-utils.html
• cigar.html
• cigarNarrow.html
• cigarOpTable.html
• cigarQNarrow.html
• cigarRangesAlongPairwiseSpace.html
• cigarRangesAlongQuerySpace.html
• cigarRangesAlongReferenceSpace.html
• cigarToRleList.html
• cigarWidthAlongPairwiseSpace.html
• cigarWidthAlongQuerySpace.html
• cigarWidthAlongReferenceSpace.html
• class+3AGAlignmentPairs.html
• class+3AGAlignments.html
• class+3AGAlignmentsList.html
• class+3AGappedReads.html
• class+3AOverlapEncodings.html
• coerce+2CGAlignmentPairs+2CDataFrame-method.html
• coerce+2CGAlignmentPairs+2CGAlignments-method.html
• coerce+2CGAlignmentPairs+2CGAlignmentsList-method.html
• coerce+2CGAlignmentPairs+2CGRanges-method.html
• coerce+2CGAlignmentPairs+2CGRangesList-method.html
• coerce+2CGAlignmentPairs+2CIntegerRanges-method.html
• coerce+2CGAlignments+2CDataFrame-method.html
• coerce+2CGAlignments+2CGRanges-method.html
• coerce+2CGAlignments+2CGRangesList-method.html
• coerce+2CGAlignments+2CIntegerRanges-method.html
• coerce+2CGAlignments+2CIntegerRangesList-method.html
• coerce+2CGAlignmentsList+2CGAlignmentPairs-method.html
• coerce+2CGAlignmentsList+2CGRanges-method.html
• coerce+2CGAlignmentsList+2CGRangesList-method.html
• coerce+2CGAlignmentsList+2CIntegerRanges-method.html
• coerce+2CGAlignmentsList+2CIntegerRangesList-method.html
• coerce+2CGenomicRanges+2CGAlignments-method.html
• coerce+2Clist+2CGAlignmentsList-method.html
• coordinate-mapping-methods.html
• countCompatibleOverlaps.html
• countDumpedAlignments.html
• coverage+2CBamFile-method.html
• coverage+2CGAlignmentPairs-method.html
• coverage+2CGAlignments-method.html
• coverage+2CGAlignmentsList-method.html
• coverage+2Ccharacter-method.html
• coverage-methods.html
• coverage.html
• elementMetadata+2CGAlignmentsList-method.html
• elementMetadata+3C-+2CGAlignmentsList-method.html
• encodeOverlaps+2CGRangesList+2CGRangesList-method.html
• encodeOverlaps+2CIntegerRanges+2CIntegerRangesList-method.html
• encodeOverlaps+2CIntegerRangesList+2CIntegerRanges-method.html
• encodeOverlaps+2CIntegerRangesList+2CIntegerRangesList-method.html
• encodeOverlaps-methods.html
• encodeOverlaps.html
• encodeOverlaps1.html
• encoding+2COverlapEncodings-method.html
• encodingHalves+2COverlapEncodings-method.html
• encodingHalves+2Ccharacter-method.html
• encodingHalves+2Cfactor-method.html
• encodingHalves.html
• explodeCigarOpLengths.html
• explodeCigarOps.html
• extractAlignmentRangesOnReference.html
• extractQueryStartInTranscript.html
• extractSkippedExonRanks+2COverlapEncodings-method.html
• extractSkippedExonRanks+2Ccharacter-method.html
• extractSkippedExonRanks+2Cfactor-method.html
• extractSkippedExonRanks.html
• extractSpannedExonRanks+2COverlapEncodings-method.html
• extractSpannedExonRanks+2Ccharacter-method.html
• extractSpannedExonRanks+2Cfactor-method.html
• extractSpannedExonRanks.html
• extractSteppedExonRanks+2COverlapEncodings-method.html
• extractSteppedExonRanks+2Ccharacter-method.html
• extractSteppedExonRanks+2Cfactor-method.html
• extractSteppedExonRanks.html
• findCompatibleOverlaps+2CGAlignmentPairs+2CGRangesList-method.html
• findCompatibleOverlaps+2CGAlignments+2CGRangesList-method.html
• findCompatibleOverlaps-methods.html
• findCompatibleOverlaps.html
• findMateAlignment.html
• findOverlaps+2CGAlignmentPairs+2CGAlignmentPairs-method.html
• findOverlaps+2CGAlignmentPairs+2CVector-method.html
• findOverlaps+2CGAlignments+2CGAlignments-method.html
• findOverlaps+2CGAlignments+2CVector-method.html
• findOverlaps+2CGAlignmentsList+2CGAlignmentsList-method.html
• findOverlaps+2CGAlignmentsList+2CVector-method.html
• findOverlaps+2CVector+2CGAlignmentPairs-method.html
• findOverlaps+2CVector+2CGAlignments-method.html
• findOverlaps+2CVector+2CGAlignmentsList-method.html
• findOverlaps-methods.html
• findOverlaps.html
• findSpliceOverlaps+2CBamFile+2CANY-method.html
• findSpliceOverlaps+2CGAlignmentPairs+2CGRangesList-method.html
• findSpliceOverlaps+2CGAlignments+2CGRangesList-method.html
• findSpliceOverlaps+2CGRangesList+2CGRangesList-method.html
• findSpliceOverlaps+2Ccharacter+2CANY-method.html
• findSpliceOverlaps-methods.html
• findSpliceOverlaps.html
• first+2CGAlignmentPairs-method.html
• first.html
• flipQuery.html
• flippedQuery+2COverlapEncodings-method.html
• flippedQuery.html
• flushDumpedAlignments.html
• getDumpedAlignments.html
• getListElement+2CGAlignments-method.html
• granges+2CGAlignmentPairs-method.html
• granges+2CGAlignments-method.html
• granges+2CGAlignmentsList-method.html
• grglist+2CGAlignmentPairs-method.html
• grglist+2CGAlignments-method.html
• grglist+2CGAlignmentsList-method.html
• intra-range-methods.html
• invertStrand+2CGAlignmentPairs-method.html
• is.unsorted+2CGAlignments-method.html
• isCompatibleWithSkippedExons+2COverlapEncodings-method.html
• isCompatibleWithSkippedExons+2Ccharacter-method.html
• isCompatibleWithSkippedExons+2Cfactor-method.html
• isCompatibleWithSkippedExons.html
• isCompatibleWithSplicing+2COverlapEncodings-method.html
• isCompatibleWithSplicing+2Ccharacter-method.html
• isCompatibleWithSplicing+2Cfactor-method.html
• isCompatibleWithSplicing.html
• isProperPair+2CGAlignmentPairs-method.html
• isProperPair.html
• junctions+2CGAlignmentPairs-method.html
• junctions+2CGAlignments-method.html
• junctions+2CGAlignmentsList-method.html
• junctions-methods.html
• junctions.html
• last+2CGAlignmentPairs-method.html
• last.html
• levels+2COverlapEncodings-method.html
• levels.OverlapEncodings.html
• makeGAlignmentPairs.html
• mapFromAlignments+2CGenomicRanges+2CGAlignments-method.html
• mapFromAlignments+2CIntegerRanges+2CGAlignments-method.html
• mapFromAlignments.html
• mapToAlignments+2CGenomicRanges+2CGAlignments-method.html
• mapToAlignments+2CIntegerRanges+2CGAlignments-method.html
• mapToAlignments.html
• names+2CGAlignmentPairs-method.html
• names+2CGAlignments-method.html
• names+2CGAlignmentsList-method.html
• names+3C-+2CGAlignmentPairs-method.html
• names+3C-+2CGAlignments-method.html
• names+3C-+2CGAlignmentsList-method.html
• narrow+2CGappedReads-method.html
• njunc+2CANY-method.html
• njunc+2CGAlignmentPairs-method.html
• njunc+2CGAlignments-method.html
• njunc+2CGAlignmentsList-method.html
• njunc.html
• order+2CGAlignments-method.html
• parallel_slot_names+2CGAlignmentPairs-method.html
• parallel_slot_names+2CGAlignments-method.html
• parallel_slot_names+2COverlapEncodings-method.html
• paths.rds
• pcompare+2CGAlignments+2CGAlignments-method.html
• pileLettersAt.html
• pintersect+2CGAlignments+2CGRanges-method.html
• pintersect+2CGRanges+2CGAlignments-method.html
• pintersect.html
• pmapFromAlignments+2CGenomicRanges+2CGAlignments-method.html
• pmapFromAlignments+2CIntegerRanges+2CGAlignments-method.html
• pmapFromAlignments.html
• pmapToAlignments+2CGenomicRanges+2CGAlignments-method.html
• pmapToAlignments+2CIntegerRanges+2CGAlignments-method.html
• pmapToAlignments.html
• qnarrow+2CGAlignments-method.html
• qnarrow+2CGAlignmentsList-method.html
• qnarrow+2CGappedReads-method.html
• qnarrow.html
• qseq+2CGappedReads-method.html
• qseq.html
• queryLoc2refLoc.html
• queryLocs2refLocs.html
• qwidth+2CGAlignments-method.html
• qwidth+2CGAlignmentsList-method.html
• qwidth+2CGappedReads-method.html
• qwidth.html
• ranges+2CGAlignmentPairs-method.html
• ranges+2CGAlignments-method.html
• ranges+2CGAlignmentsList-method.html
• rank+2CGAlignments-method.html
• readGAlignmentPairs+2CBamFile-method.html
• readGAlignmentPairs+2Ccharacter-method.html
• readGAlignmentPairs.html
• readGAlignments+2CBamFile-method.html
• readGAlignments+2CBamViews-method.html
• readGAlignments+2Ccharacter-method.html
• readGAlignments.html
• readGAlignmentsList+2CBamFile-method.html
• readGAlignmentsList+2Ccharacter-method.html
• readGAlignmentsList.html
• readGappedReads+2CBamFile-method.html
• readGappedReads+2Ccharacter-method.html
• readGappedReads.html
• readSTARJunctions.html
• readTopHatJunctions.html
• relistToClass+2CGAlignments-method.html
• rglist+2CGAlignments-method.html
• rglist+2CGAlignmentsList-method.html
• rname+2CGAlignments-method.html
• rname+2CGAlignmentsList-method.html
• rname+3C-+2CGAlignments-method.html
• rname+3C-+2CGAlignmentsList-method.html
• rname+3C-.html
• rname.html
• second+2CGAlignmentPairs-method.html
• second.html
• selectEncodingWithCompatibleStrand.html
• seqinfo+2CGAlignmentPairs-method.html
• seqinfo+2CGAlignments-method.html
• seqinfo+2CGAlignmentsList-method.html
• seqinfo+3C-+2CGAlignmentPairs-method.html
• seqinfo+3C-+2CGAlignments-method.html
• seqinfo+3C-+2CGAlignmentsList-method.html
• seqlevelsInUse+2CGAlignmentPairs-method.html
• seqnames+2CGAlignmentPairs-method.html
• seqnames+2CGAlignments-method.html
• seqnames+2CGAlignmentsList-method.html
• seqnames+3C-+2CGAlignments-method.html
• seqnames+3C-+2CGAlignmentsList-method.html
• sequenceLayer.html
• setops-methods.html
• show+2CGAlignmentPairs-method.html
• show+2CGAlignments-method.html
• show+2CGAlignmentsList-method.html
• show+2COverlapEncodings-method.html
• sort+2CGAlignments-method.html
• stackStringsFromBam.html
• stackStringsFromGAlignments.html
• start+2CGAlignments-method.html
• strand+2CGAlignmentPairs-method.html
• strand+2CGAlignments-method.html
• strand+2CGAlignmentsList-method.html
• strand+3C-+2CGAlignments+2CANY-method.html
• strand+3C-+2CGAlignmentsList+2Ccharacter-method.html
• strand+3C-+2CGAlignmentsList-method.html
• strandMode+2CGAlignmentPairs-method.html
• strandMode+3C-+2CGAlignmentPairs-method.html
• strandMode+3C-.html
• strandMode.html
• summarizeJunctions.html
• summarizeOverlaps+2CBamViews+2Cmissing-method.html
• summarizeOverlaps+2CGRanges+2CBamFile-method.html
• summarizeOverlaps+2CGRanges+2CBamFileList-method.html
• summarizeOverlaps+2CGRanges+2CGAlignmentPairs-method.html
• summarizeOverlaps+2CGRanges+2CGAlignments-method.html
• summarizeOverlaps+2CGRanges+2CGAlignmentsList-method.html
• summarizeOverlaps+2CGRanges+2CGRanges-method.html
• summarizeOverlaps+2CGRanges+2CGRangesList-method.html
• summarizeOverlaps+2CGRanges+2Ccharacter-method.html
• summarizeOverlaps+2CGRangesList+2CBamFile-method.html
• summarizeOverlaps+2CGRangesList+2CBamFileList-method.html
• summarizeOverlaps+2CGRangesList+2CGAlignmentPairs-method.html
• summarizeOverlaps+2CGRangesList+2CGAlignments-method.html
• summarizeOverlaps+2CGRangesList+2CGAlignmentsList-method.html
• summarizeOverlaps+2CGRangesList+2CGRanges-method.html
• summarizeOverlaps+2CGRangesList+2CGRangesList-method.html
• summarizeOverlaps+2CGRangesList+2Ccharacter-method.html
• summarizeOverlaps-methods.html
• summarizeOverlaps.html
• unlist+2CGAlignmentPairs-method.html
• update+2CGAlignments-method.html
• updateObject+2CGAlignmentPairs-method.html
• updateObject+2CGAlignments-method.html
• validCigar.html
• width+2CGAlignments-method.html
• windows+2CGAlignments-method.html

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Fabrice Bellet, Wed Jul 10 00:08:09 2024